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Sequence assembly
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11	MICROBIAL WHOLE GENOME SEQUENCING BEST PRACTICES With Single Molecule, Real-Time (SMRT®) Sequencing, you can affordably characterize complete microbial genomes. For most microbes, closed genomes and accessory plasmids c Add to Reading List Source URL: www.pacb.com Language: English - Date: 2016-06-13 12:12:36 Biology Bioinformatics Genetics Molecular biology Genomics DNA sequencing Biotechnology Pacific Biosciences Single molecule real time sequencing Sequence assembly Whole genome sequencing Contig
12	The GigaSolution to data publication, reuse and integration. Christopher I Hunter, Peter Li, Xiao Si Zhe, Robert Davidson, Laurie Goodman & Scott C Edmunds Affiliation: GigaScience, BGI-HK Research Institute, 16 Dai Fu S Add to Reading List Source URL: dils2014.inesc-id.pt Language: English - Date: 2016-07-28 13:22:32 Academia Bioinformatics Publishing Academic publishing Open access Open science Scholarly communication Sequence assembly Data publishing Galaxy Knowledge Beijing Genomics Institute
13	SMRT® Analysis System Requirements Introduction The SMRT Analysis software suite performs assembly and variant detection analysis of sequencing data generated by the PacBio® RS II instrument. Add to Reading List Source URL: www.pacb.com Language: English - Date: 2015-09-18 03:34:00 Concurrent computing Bioinformatics Computing Software Pacific Biosciences Cluster computing Parallel computing Job scheduling Sequence assembly Oracle Grid Engine
14	Genome Informatics 12: 290–Biopathway Model Conversion from E-CELL to Genomic Object Net Add to Reading List Source URL: www.jsbi.org Language: English - Date: 2002-01-17 03:51:06 Genetics Biology Genetic mapping Genomics Bioinformatics Genome Assembler Sequence assembly Human genome Pilin Spreadsheet
15	SCIENTISTS ADVANCE UNDERSTANDING OF MICROBIAL GENOMES, EPIGENOMES, AND COMMUNITIES WITH SMRT® SEQUENCING With PacBio® long-read sequencing, scientists are making exciting new discoveries about the microbes Add to Reading List Source URL: www.pacb.com Language: English - Date: 2016-06-13 12:12:42 Biology Genetics Genomics Molecular biology Bioinformatics DNA sequencing Biotechnology Pacific Biosciences Whole genome sequencing Single molecule real time sequencing Sequence assembly Contig
16	First steps towards automated metagenomic assembly Mihai Pop Sergey Koren Dan Sommer University of Maryland, College Park This presentation is licensed under the Creative Commons Attribution 3.0 Unported License Add to Reading List Source URL: hmpdacc.org Language: English - Date: 2014-02-26 12:33:40 Biology Bioinformatics Genetics Genomics Sequence assembly Metagenomics Genome Foolishness Hybrid genome assembly
17	CS681: Advanced Topics in Computational Biology Week 4, LecturesCan Alkan EA224 Add to Reading List Source URL: www.cs.bilkent.edu.tr Language: English - Date: 2012-03-02 07:34:35 Biology Bioinformatics Computational phylogenetics Sequence alignment NeedlemanWunsch algorithm DNA sequencing Sanger sequencing Genome Gap penalty Sequence assembly
18	CS 394C Questions about Assemblers 1. What is a “read”? 2. What is meant by “3-fold coverage”? 3. What is a “DNA fragment”? 4. What is a “mate-pair”? Add to Reading List Source URL: www.cs.utexas.edu Language: English - Date: 2013-10-28 13:24:30 Biology Molecular biology DNA sequencing Bioinformatics Biochemistry Genomics Biotechnology Sequence assembly Shotgun sequencing Sequencing Hybrid genome assembly Sanger sequencing
19	Major Achievements The primary focus in my varied career has always been on doing good computation in the service of science, which has led in some odd directions: Avida, In 1993, as my freshman summer project, Add to Reading List Source URL: ged.msu.edu Language: English - Date: 2012-07-23 16:10:55 Biology Bioinformatics Genetics Genomics Molecular biology Environmental microbiology DNA sequencing Metagenomics Shotgun sequencing Sequence assembly Whole genome sequencing Viral metagenomics
20	Robert Schmieder - Quality control with PRINSEQ   Add to Reading List Source URL: prinseq.sourceforge.net Language: English - Date: 2011-01-18 18:24:42 Bioinformatics Biology FASTQ format Sequence assembly FASTA DNA sequencing

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